Publications:
Functional genomics
Joardar, V., Lindeberg, M., Jackson, R.W., Selengut, J., Dodson, R., Brinkac, L.M., Daugherty, S.C., DeBoy, R., Durkin, A.S., Giglio, M.G., Madupu, R., Nelson, W.C., Rosovitz, M.J., Sullivan, S., Haft, D.H., Creasy, T., Davidsen, T., Zafar, N., Zhou, L., Halpin, R., Holley, T., Khouri, H., Feldblyum, T., White, O., Fraser, C.M., Chatterjee, A.K., Cartinhour, S., Schneider, D.J., Mansfield, J., Collmer, A., and Buell, C.R. 2005. Whole genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals sequence divergence among pathovars in genes involved in virulence and mobile genetic elements. J. Bacteriol 187:6488-6498. Pubmed.
Joardar, V., Lindeberg, M., Schneider, D.J., Collmer, A., and Buell, C.R. 2005. Lineage specific regions in Pseudomonas syringae pv tomato DC3000. Mol. Plant Pathol. 6:53-64.
D'Ascenzo, M.D., Collmer, A., and Martin, G.B. 2004. PeerGAD: A peer review-based and community-centric Web application for viewing and annotating genome sequences. Nucleic Acids Res. 32:3124-3135. Pubmed.
Rojas, C.M., Ham, J.H., Kim, J.F., Beer, S.V., and Collmer, A. 2004. The Erwinia chrysanthemi EC16 hrp/hrc gene cluster encodes an active Hrp type III secretion system that is flanked by virulence genes functionally unrelated to the Hrp system. Mol. Plant-Microbe Interact. 17:644-653. Pubmed.
Buell, C.R., Joardar, V., Lindeberg, M., Selengut, J., Paulsen, I.T., Gwinn, M.L., Dodson, R.J., Deboy, R.T., Durkin, A.S., Kolonay, J.F., Madupu, R., Daugherty, S., Brinkac, L., Beanan, M.J., Haft, D.H., Nelson, W.C., Davidsen, T., Liu, J., Yuan, Q., Khouri, H., Fedorova, N., Tran, B., Russell, D., Berry, K., Utterback, T., Vanaken, S.E., Feldblyum, T.V., D'Ascenzo, M., Deng, W.-L., Ramos, A.R., Alfano, J.R., Cartinhour, S., Chatterjee, A.K., Delaney, T.P., Lazarowitz, S.G., Martin, G.B., Schneider, D.J., Tang, X., Bender, C.L., White, O., Fraser, C.M., and Collmer, A. 2003. The complete sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl. Acad. Sci. USA 100:10181-10186. Pubmed.