acterium-Host Genomics: BIOMI/PLPA 608
Lecture 11/24/04
Pseudomonas aeruginosa and P. syringae

Genome sequence of Pseudomonas aeruginosa, the ultimate opportunistic pathogen (Stover et al. 2000)

Conservation of genome content and virulence determinants among clinical and environmental isolates of P. aeruginosa (Wolfgang et al. 2003)

Comprehensive transposon mutant library of P. aeruginosa (Jacobs et al. 2003)

The P. aeruginosa PAO1 gene collection (Labaer et al. 2004)

Use of model plant hosts and multi-kingdom pathogen P. aeruginosa PA14 to identify virulence factors involved in both plant and animal pathogenesis (Rahme et al. 1997; Rahme et al. 2000)

The multi-kingdom pathogen P. aeruginosa PA14 carries two pathogenicity islands harboring plant and animal virulence genes (He et al. 2004)

Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors (Collmer et al. 2002)

The complete genome sequence of P. s. tomato DC3000 (Buell et al. 2003)

Pending complete genome sequences for P. s. syringae B728a and P. s. phaseolicola 1448A (note that DC3000, B728a, and 1448A represent each of the 3 major groups of P. syringae pathovars defined by phylogenetic analysis (Sawada et al. 1999) and insights from comparison of variable regions (Deng et al. 2003)

References:


Buell, C. R., Joardar, V., Lindeberg, M., Selengut, J., Paulsen, I. T., Gwinn, M. L., Dodson, R. J., Deboy, R. T., Durkin, A. S., Kolonay, J. F., Madupu, R., Daugherty, S., Brinkac, L., Beanan, M. J., Haft, D. H., Nelson, W. C., Davidsen, T., Liu, J., Yuan, Q., Khouri, H., Fedorova, N., Tran, B., Russell, D., Berry, K., Utterback, T., Vanaken, S. E., Feldblyum, T. V., D'Ascenzo, M., Deng, W.-L., Ramos, A. R., Alfano, J. R., Cartinhour, S., Chatterjee, A. K., Delaney, T. P., Lazarowitz, S. G., Martin, G. B., Schneider, D. J., Tang, X., Bender, C. L., White, O., Fraser, C. M., and Collmer, A. 2003. The complete sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl. Acad. Sci. USA 100:10181-10186.

Collmer, A., Lindeberg, M., Petnicki-Ocwieja, T., Schneider, D. J., and Alfano, J. R. 2002. Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors. Trends in Microbiol. 10:462-469.

Deng, W.-L., A. Rehm, A. Charkowski, C. M. Rojas, and A. Collmer. 2003. Pseudomonas syringae exchangeable effector loci: sequence diversity in representative pathovars and virulence function in P. syringae pv. syringae B728a. J. Bacteriol. 185:2592-2602.

He, J., Baldini, R. L., Deziel, E., Saucier, M., Zhang, Q., Liberati, N. T., Lee, D., Urbach, J., Goodman, H. M., and Rahme, L. G. 2004. The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes. Proc. Natl. Acad. Sci. USA 101:2530-2535.

Jacobs, M. A., Alwood, A., Thaipisuttikul, I., Spencer, D., Haugen, E., Ernst, S., Will, O., Kaul, R., Raymond, C., Levy, R., Chun-Rong, L., Guenthner, D., Bovee, D., Olson, M. V., and Manoil, C. 2003. Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc Natl Acad Sci U S A 100:14339-14344.

Labaer, J., Qiu, Q., Anumanthan, A., Mar, W., Zuo, D., Murthy, T. V., Taycher, H., Halleck, A., Hainsworth, E., Lory, S., and Brizuela, L. 2004. The Pseudomonas aeruginosa PA01 gene collection. Genome Res 14:2190-200.

Rahme, L. G., Ausubel, F. M., Cao, H., Drenkard, E., Goumnerov, B. C., Lau, G. W., Mahajan-Miklos, S., Plotnikova, J., Tan, M. W., Tsongalis, J., Walendziewicz, C. L., and Tompkins, R. G. 2000. Plants and animals share functionally common bacterial virulence factors. Proc. Natl. Acad. Sci. U S A 97:8815-8821.

Rahme, L. G., Tan, M. W., Le, L., Wong, S. M., Tompkins, R. G., Calderwood, S. B., and Ausubel, F. M. 1997. Use of model plant hosts to identify Pseudomonas aeruginosa virulence factors. Proc. Natl. Acad. Sci. USA 94:13245-13250.

Sawada, H., Suzuki, F., Matsuda, I., and Saitou, N. 1999. Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster. J. Mol. Evol. 49:627-644.

Stover, C. K., Pham, X. Q., Erwin, A. L., Mizoguchi, S. D., Warrener, P., Hickey, M. J., Brinkman, F. S., Hufnagle, W. O., Kowalik, D. J., Lagrou, M., Garber, R. L., Goltry, L., Tolentino, E., Westbrock-Wadman, S., Yuan, Y., Brody, L. L., Coulter, S. N., Folger, K. R., Kas, A., Larbig, K., Lim, R., Smith, K., Spencer, D., Wong, G. K., Wu, Z., and Paulsen, I. T. 2000. Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. Nature 406:959-964.

Wolfgang, M. C., Kulasekara, B. R., Liang, X., Boyd, D., Wu, K., Yang, Q., Miyada, C. G., and Lory, S. 2003. Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U S A 100:8484-8489.

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